IL_4V52_270

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V52_270 not in the Motif Atlas

Homologous match to IL_5J7L_263

Geometric discrepancy: 0.0887

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4V52|1|DB|U|703
4V52|1|DB|G|704
4V52|1|DB|A|705
4V52|1|DB|A|706
4V52|1|DB|G|707
*
4V52|1|DB|U|724
4V52|1|DB|G|725
4V52|1|DB|G|726
4V52|1|DB|A|727
4V52|1|DB|G|728

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2