IL_4V52_279

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V52_279 not in the Motif Atlas

Homologous match to IL_5J7L_272

Geometric discrepancy: 0.0998

The information below is about IL_5J7L_272

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4V52|1|DB|G|864
4V52|1|DB|C|865
4V52|1|DB|A|866
4V52|1|DB|C|867
4V52|1|DB|U|868
*
4V52|1|DB|A|909
4V52|1|DB|A|910
4V52|1|DB|A|911
4V52|1|DB|C|912

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DA

5S ribosomal RNA; 5S rRNA

Chain DM

50S ribosomal protein L16