IL_4V53_006
3D structure
- PDB id
- 4V53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- CGG*CGAG
- Length
- 7 nucleotides
- Bulged bases (A, C, G, U)
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V53_006 not in the Motif Atlas
- Homologous match to IL_5J7L_006
- Geometric discrepancy: 0.1661
- The information below is about IL_5J7L_006
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_65006.1
- Basepair signature
- cWW-L-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V53|1|AA|C|67
4V53|1|AA|G|68
4V53|1|AA|G|69
*
4V53|1|AA|C|99
4V53|1|AA|G|100
4V53|1|AA|A|101
4V53|1|AA|G|102
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AT
- 30S ribosomal protein S20
Coloring options: