IL_4V53_014

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4V53|1|AA|U|244, 4V53|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_014 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.101

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V53|1|AA|G|242
4V53|1|AA|A|243
4V53|1|AA|U|244
4V53|1|AA|U|245
4V53|1|AA|A|246
4V53|1|AA|G|247
*
4V53|1|AA|C|277
4V53|1|AA|G|278
4V53|1|AA|A|279
4V53|1|AA|C|280
4V53|1|AA|G|281
4V53|1|AA|A|282
4V53|1|AA|U|283
4V53|1|AA|C|284

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17