IL_4V53_018

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_018 not in the Motif Atlas

Homologous match to IL_4LFB_015

Geometric discrepancy: 0.1277

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4V53|1|AA|A|371
4V53|1|AA|C|372
4V53|1|AA|A|373
4V53|1|AA|A|374
4V53|1|AA|U|375
*
4V53|1|AA|A|389
4V53|1|AA|U|390

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16