IL_4V53_035

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_035 not in the Motif Atlas

Homologous match to IL_5J7L_032

Geometric discrepancy: 0.1631

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_76488.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

4V53|1|AA|C|658
4V53|1|AA|U|659
*
4V53|1|AA|A|746
4V53|1|AA|A|747
4V53|1|AA|G|748

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AO

30S ribosomal protein S15