Motif IL_26793.1 Version IL_26793.1 of this group appears in releases 3.95 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8P9A_263 | 8P9A | 0.2925 | 0 | Single stack bend | AR | LSU rRNA | U | 1111 | A | 1112 | G | 1113 | * | C | 969 | A | 970 | cWW | cWW | |
| 2 | IL_8CRE_038 | 8CRE | 0.2727 | 0 | 1 | LSU rRNA | U | 1107 | A | 1108 | G | 1109 | * | C | 965 | A | 966 | cWW | cWW | ||
| 3 | IL_5J7L_391 | 5J7L | 0.2576 | 0 | Single stack bend | DA | LSU rRNA | OMC | 2498 | C | 2499 | U | 2500 | * | A | 2453 | G | 2454 | cWW | cWW | |
| 4 | IL_4WF9_089 | 4WF9 | 0.2490 | 0 | Single stack bend | X | LSU rRNA | C | 2525 | C | 2526 | U | 2527 | * | A | 2480 | G | 2481 | cWW | cWW | |
| 5 | IL_9DFE_091 | 9DFE | 0.2286 | 0 | Single stack bend | 1A | LSU rRNA | C | 2498 | C | 2499 | U | 2500 | * | A | 2453 | G | 2454 | cWW | cWW | |
| 6 | IL_7A0S_083 | 7A0S | 0.2475 | 0 | Single stack bend | X | LSU rRNA | C | 2477 | C | 2478 | U | 2479 | * | A | 2432 | G | 2433 | cWW | cWW | |
| 7 | IL_5J7L_044 | 5J7L | 0.2368 | 0 | Single stack bend | AA | SSU rRNA | G | 1041 | A | 1042 | G | 1043 | * | C | 998 | C | 999 | cWW | cWW | |
| 8 | IL_7A0S_054 | 7A0S | 0.1699 | 0 | Single stack bend | X | LSU rRNA | A | 1463 | A | 1464 | G | 1465 | * | C | 1477 | U | 1478 | cWW | cWW | |
| 9 | IL_5J7L_032 | 5J7L | 0.2712 | 0 | Single stack bend | AA | SSU rRNA | A | 746 | A | 747 | G | 748 | * | C | 658 | U | 659 | cWW | cWW | |
| 10 | IL_4V9F_081 | 4V9F | 0.2382 | 0 | Single stack bend | 0 | LSU rRNA | U | 2436 | A | 2437 | G | 2438 | * | C | 2454 | A | 2455 | cWW | cWW | |
| 11 | IL_5J7L_269 | 5J7L | 0.1756 | 0 | Single stack bend | DA | LSU rRNA | G | 926 | A | 927 | A | 928 | * | U | 850 | C | 851 | cWW | cWW | |
| 12 | IL_7ZO1_005 | 7ZO1 | 0.0000 | 0 | A+C | CD34 sgRNA + CD34 off-target9 DNA target strand | G | 5 | A | 6 | G | 7 | * | DC | 14 | DC | 15 | cWW | cWW | ||
| 13 | IL_8CRE_091 | 8CRE | 0.1672 | 0 | Single stack bend (H) | 1 | LSU rRNA | C | 2182 | U | 2183 | G | 2184 | * | C | 2215 | G | 2216 | cWW | cWW | |
| 14 | IL_7KGA_006 | 7KGA | 0.3326 | 0 | Single stack bend | B | Flavivirus DB element | A | 37 | C | 38 | U | 39 | * | A | 15 | U | 16 | cWW | cWW | |
| 15 | IL_9DFE_057 | 9DFE | 0.4186 | 0 | Single stack bend | 1A | LSU rRNA | G | 1448 | A | 1449 | G | 1450 | * | C | 1462 | C | 1463 | cWW | ncWW | cWW |
| 16 | IL_5VSU_003 | 5VSU | 0.4592 | 0 | Single stack bend | I | U6 snRNA | A | 75 | A | 76 | G | 77 | * | C | 69 | U | 70 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAG*CA | 3 |
| CCU*AG | 3 |
| GAG*CC | 3 |
| AAG*CU | 3 |
| (OMC)CU*AG | 1 |
| GAA*UC | 1 |
| CUG*CG | 1 |
| ACU*AU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 10 |
| C* | 5 |
| U* | 1 |
- Annotations
-
- Single stack bend (13)
- (2)
- Single stack bend (H) (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.08 | Avg 0.33 | Max 0.60
Coloring options: