IL_4V53_039

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_039 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.0976

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

4V53|1|AA|G|774
4V53|1|AA|G|775
4V53|1|AA|G|776
4V53|1|AA|A|777
4V53|1|AA|G|778
*
4V53|1|AA|U|804
4V53|1|AA|C|805

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BC

50S ribosomal protein L2