IL_4V53_053
3D structure
- PDB id
- 4V53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- GUUGC*GAACUC
- Length
- 11 nucleotides
- Bulged bases (A, C, G, U)
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V53_053 not in the Motif Atlas
- Homologous match to IL_5J7L_051
- Geometric discrepancy: 0.1187
- The information below is about IL_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93211.1
- Basepair signature
- cWW-cWS-cWW-L-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4V53|1|AA|G|1124
4V53|1|AA|U|1125
4V53|1|AA|U|1126
4V53|1|AA|G|1127
4V53|1|AA|C|1128
*
4V53|1|AA|G|1144
4V53|1|AA|A|1145
4V53|1|AA|A|1146
4V53|1|AA|C|1147
4V53|1|AA|U|1148
4V53|1|AA|C|1149
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AI
- 30S ribosomal protein S9
- Chain AJ
- 30S ribosomal protein S10
Coloring options: