IL_4V53_070
3D structure
- PDB id
- 4V53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- GGUCCC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- 4V53|1|BA|U|25
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V53_070 not in the Motif Atlas
- Homologous match to IL_7A0S_103
- Geometric discrepancy: 0.3165
- The information below is about IL_7A0S_103
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18472.4
- Basepair signature
- cWW-tSW-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V53|1|BA|G|23
4V53|1|BA|G|24
4V53|1|BA|U|25
4V53|1|BA|C|26
4V53|1|BA|C|27
4V53|1|BA|C|28
*
4V53|1|BA|G|56
4V53|1|BA|A|57
4V53|1|BA|A|58
4V53|1|BA|A|59
4V53|1|BA|C|60
Current chains
- Chain BA
- 5S rRNA
Nearby chains
- Chain BF
- 50S ribosomal protein L5
- Chain BO
- 50S ribosomal protein L18
Coloring options: