IL_4V53_072

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

ACCCC*GAACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_072 not in the Motif Atlas

Geometric match to IL_5J7L_358

Geometric discrepancy: 0.2803

The information below is about IL_5J7L_358

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.11

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

9

Unit IDs

4V53|1|BA|A|34
4V53|1|BA|C|35
4V53|1|BA|C|36
4V53|1|BA|C|37
4V53|1|BA|C|38
*
4V53|1|BA|G|44
4V53|1|BA|A|45
4V53|1|BA|A|46
4V53|1|BA|C|47
4V53|1|BA|U|48

Current chains

Chain BA

5S rRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BF

50S ribosomal protein L5

Chain BO

50S ribosomal protein L18