IL_4V53_087

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_087 not in the Motif Atlas

Homologous match to IL_5J7L_258

Geometric discrepancy: 0.1001

The information below is about IL_5J7L_258

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

22

Unit IDs

4V53|1|BB|U|606
4V53|1|BB|U|607
4V53|1|BB|A|608
4V53|1|BB|A|609
4V53|1|BB|C|610
*
4V53|1|BB|G|618
4V53|1|BB|G|619
4V53|1|BB|G|620
4V53|1|BB|A|621
4V53|1|BB|G|622

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15