Motif IL_66798.2 Version IL_66798.2 of this group appears in releases 3.91 to 3.92

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	2-10	3-8	4-7	5-6
1	IL_4WF9_074	4WF9	0.5381	0	Triple sheared	X	LSU rRNA	C	1909	G	1910	A	1911	A	1912	U	1913	*	A	1883	G	1884	G	1885	A	1886	G	1887	ncWW		cSW	tHS	ntHS	cWW
2	IL_4V9F_020	4V9F	0.1615	0	AAA cross-strand stack	0	LSU rRNA	C	663	U	664	A	665	A	666	C	667	*	G	679	G	680	G	681	A	682	G	683	cWW	ntWH			tHS	cWW
3	IL_5J7L_258	5J7L	0.1124	0	AAA cross-strand stack	DA	LSU rRNA	U	606	U	607	A	608	A	609	C	610	*	G	618	G	619	G	620	A	621	G	622	cWW	ntWH			tHS	cWW
4	IL_9DFE_014	9DFE	0.0000	0		1A	LSU rRNA	U	606	U	607	A	608	A	609	G	610	*	C	618	G	619	G	620	A	621	G	622	cWW	ntWH			tHS	cWW
5	IL_7A0S_013	7A0S	0.1355	0	AAA cross-strand stack	X	LSU rRNA	U	616	U	617	A	618	A	619	G	620	*	C	629	G	630	G	631	A	632	G	633	cWW				tHS	cWW
6	IL_4WF9_019	4WF9	0.1660	0	AAA cross-strand stack	X	LSU rRNA	U	649	U	650	A	651	A	652	G	653	*	U	663	G	664	G	665	A	666	G	667	cWW	ntWW			tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUAAG*CGGAG	2
CGAAU*AGGAG	1
CUAAC*GGGAG	1
UUAAC*GGGAG	1
UUAAG*UGGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAA*GGA	5
GAA*GGA	1

Release history

Release	3.91	3.92
Date	2024-12-04	2025-01-01
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: AAA cross-strand stack (4)
Triple sheared (1)
(1)
Basepair signature: cWW-L-R-L-R-tHS-cWW
Heat map statistics: Min 0.11 | Avg 0.25 | Max 0.59

Help

Coloring options: Nucleotide numbers

Copyright 2025 BGSU RNA group. Page generated in 0.6382 s