IL_4V53_089

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V53|1|BB|G|801, 4V53|1|BB|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_089 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0715

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V53|1|BB|G|674
4V53|1|BB|A|675
4V53|1|BB|A|676
4V53|1|BB|A|677
4V53|1|BB|C|678
*
4V53|1|BB|G|799
4V53|1|BB|A|800
4V53|1|BB|G|801
4V53|1|BB|A|802
4V53|1|BB|U|803
4V53|1|BB|A|804
4V53|1|BB|G|805
4V53|1|BB|C|806

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15