IL_4V53_092

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_092 not in the Motif Atlas

Homologous match to IL_5J7L_263

Geometric discrepancy: 0.0974

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4V53|1|BB|U|703
4V53|1|BB|G|704
4V53|1|BB|A|705
4V53|1|BB|A|706
4V53|1|BB|G|707
*
4V53|1|BB|U|724
4V53|1|BB|G|725
4V53|1|BB|G|726
4V53|1|BB|A|727
4V53|1|BB|G|728

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2