IL_4V53_094

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

4V53|1|BB|G|776, 4V53|1|BB|A|788, 4V53|1|BB|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_094 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.0797

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

4V53|1|BB|G|775
4V53|1|BB|G|776
4V53|1|BB|G|777
*
4V53|1|BB|C|787
4V53|1|BB|A|788
4V53|1|BB|A|789
4V53|1|BB|U|790
4V53|1|BB|C|791

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2

Chain BS

50S ribosomal protein L22