IL_4V53_116

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V53|1|BB|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_116 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1642

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V53|1|BB|C|1208
4V53|1|BB|U|1209
4V53|1|BB|G|1210
4V53|1|BB|C|1211
4V53|1|BB|G|1212
4V53|1|BB|A|1213
4V53|1|BB|A|1214
4V53|1|BB|G|1215
*
4V53|1|BB|U|1234
4V53|1|BB|G|1235
4V53|1|BB|G|1236
4V53|1|BB|A|1237
4V53|1|BB|G|1238

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BQ

50S ribosomal protein L20