IL_4V53_119

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_119 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.1239

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V53|1|BB|C|1319
4V53|1|BB|C|1320
4V53|1|BB|A|1321
4V53|1|BB|A|1322
4V53|1|BB|C|1323
*
4V53|1|BB|G|1331
4V53|1|BB|G|1332
4V53|1|BB|G|1333

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L22