IL_4V53_137

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_137 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.138

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4V53|1|BB|U|1720
4V53|1|BB|G|1721
4V53|1|BB|A|1722
4V53|1|BB|G|1723
4V53|1|BB|G|1724
*
4V53|1|BB|U|1736
4V53|1|BB|G|1737
4V53|1|BB|G|1738
4V53|1|BB|A|1739
4V53|1|BB|G|1740

Current chains

Chain BB

23S rRNA

Nearby chains