IL_4V53_156

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

AAU*AGGUU

Length

8 nucleotides

Bulged bases

4V53|1|BB|U|2320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_156 not in the Motif Atlas

Homologous match to IL_5J7L_332

Geometric discrepancy: 0.5332

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4V53|1|BB|A|2297
4V53|1|BB|A|2298
4V53|1|BB|U|2299
*
4V53|1|BB|A|2317
4V53|1|BB|G|2318
4V53|1|BB|G|2319
4V53|1|BB|U|2320
4V53|1|BB|U|2321

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BF

50S ribosomal protein L5

Chain BW

50S ribosomal protein L27