Motif IL_61476.2 Version IL_61476.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_080 | 7A0S | 0.3706 | 0 | Isolated tHS basepair with bulges | X | LSU rRNA | U | 2296 | G | 2297 | U | 2298 | A | 2299 | G | 2300 | * | C | 2276 | A | 2277 | A | 2278 | cWW | ntSH | cWW | |
| 2 | IL_8CRE_108 | 8CRE | 0.3212 | 0 | 1 | LSU rRNA | A | 2658 | G | 2659 | U | 2660 | A | 2661 | G | 2662 | * | C | 2638 | A | 2639 | U | 2640 | cWW | tSH | cWW | ||
| 3 | IL_8P9A_326 | 8P9A | 0.2920 | 0 | Isolated tHS basepair with bulges (H) | AR | LSU rRNA | A | 2686 | G | 2687 | U | 2688 | A | 2689 | G | 2690 | * | C | 2666 | A | 2667 | U | 2668 | cWW | tSH | cWW | |
| 4 | IL_4WF9_086 | 4WF9 | 0.2004 | 0 | Isolated tHS basepair with bulges | X | LSU rRNA | C | 2344 | A | 2345 | U | 2346 | A | 2347 | G | 2348 | * | C | 2324 | A | 2325 | G | 2326 | cWW | tSH | cWW | |
| 5 | IL_4V9F_080 | 4V9F | 0.0000 | 0 | Isolated tHS basepair with bulges | 0 | LSU rRNA | C | 2351 | G | 2352 | A | 2353 | A | 2354 | G | 2355 | * | C | 2331 | A | 2332 | G | 2333 | cWW | tSH | cWW | |
| 6 | IL_9DFE_088 | 9DFE | 0.1774 | 0 | 1A | LSU rRNA | C | 2317 | G | 2318 | G | 2319 | A | 2320 | G | 2321 | * | C | 2297 | A | 2298 | G | 2299 | cWW | tSH | cWW | ||
| 7 | IL_5J7L_332 | 5J7L | 0.7080 | 0 | DA | LSU rRNA | A | 2317 | G | 2318 | G | 2319 | U | 2320 | U | 2321 | * | A | 2297 | A | 2298 | U | 2299 | cWW | tSH | ntSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUAG*CAU | 2 |
| UGUAG*CAA | 1 |
| CAUAG*CAG | 1 |
| CGAAG*CAG | 1 |
| CGGAG*CAG | 1 |
| AGGUU*AAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA*A | 3 |
| AUA*A | 1 |
| GAA*A | 1 |
| GGA*A | 1 |
| GGU*A | 1 |
- Annotations
-
- Isolated tHS basepair with bulges (3)
- (3)
- Isolated tHS basepair with bulges (H) (1)
- Basepair signature
- cWW-tSH-L-cWW-L
- Heat map statistics
- Min 0.12 | Avg 0.40 | Max 0.97
Coloring options: