IL_4V53_170

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_170 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.1122

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V53|1|BB|C|2652
4V53|1|BB|U|2653
4V53|1|BB|A|2654
4V53|1|BB|G|2655
4V53|1|BB|U|2656
4V53|1|BB|A|2657
4V53|1|BB|C|2658
*
4V53|1|BB|G|2663
4V53|1|BB|G|2664
4V53|1|BB|A|2665
4V53|1|BB|C|2666
4V53|1|BB|C|2667
4V53|1|BB|G|2668

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BG

50S ribosomal protein L6