IL_4V53_190

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V53|1|CA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_190 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1276

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V53|1|CA|G|147
4V53|1|CA|G|148
4V53|1|CA|A|149
4V53|1|CA|U|150
4V53|1|CA|A|151
4V53|1|CA|A|152
4V53|1|CA|C|153
*
4V53|1|CA|G|168
4V53|1|CA|C|169
4V53|1|CA|U|170
4V53|1|CA|A|171
4V53|1|CA|A|172
4V53|1|CA|U|173
4V53|1|CA|A|174
4V53|1|CA|C|175

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20