IL_4V53_224

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_224 not in the Motif Atlas

Geometric match to IL_5J7L_043

Geometric discrepancy: 0.1773

The information below is about IL_5J7L_043

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V53|1|CA|G|993
4V53|1|CA|A|994
4V53|1|CA|C|995
4V53|1|CA|A|996
4V53|1|CA|U|997
*
4V53|1|CA|A|1044
4V53|1|CA|C|1045

Current chains

Chain CA

16S rRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain CN

30S ribosomal protein S14