IL_4V53_238

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases (A, C, G, U)

1400C, 1503A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_238 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.0922

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36143.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

4V53|1|CA|C|1399
4V53|1|CA|C|1400
4V53|1|CA|G|1401
*
4V53|1|CA|C|1501
4V53|1|CA|A|1502
4V53|1|CA|A|1503
4V53|1|CA|G|1504

Current chains

Chain CA

16S rRNA

Nearby chains