IL_4V53_239

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_239 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1232

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V53|1|CA|G|1401
4V53|1|CA|C|1402
4V53|1|CA|C|1403
4V53|1|CA|C|1404
*
4V53|1|CA|G|1497
4V53|1|CA|U|1498
4V53|1|CA|A|1499
4V53|1|CA|A|1500
4V53|1|CA|C|1501

Current chains

Chain CA

16S rRNA

Nearby chains

Chain DB

Large subunit ribosomal RNA; LSU rRNA