IL_4V53_261

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_261 not in the Motif Atlas

Homologous match to IL_4WF9_014

Geometric discrepancy: 0.1652

The information below is about IL_4WF9_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

4V53|1|DB|U|293
4V53|1|DB|A|294
4V53|1|DB|G|295
*
4V53|1|DB|C|343
4V53|1|DB|A|344
4V53|1|DB|A|345
4V53|1|DB|A|346
4V53|1|DB|A|347

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DU

50S ribosomal protein L24