IL_4V53_331

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

4V53|1|DB|C|2104

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_331 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.2981

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V53|1|DB|C|2103
4V53|1|DB|C|2104
4V53|1|DB|U|2105
*
4V53|1|DB|A|2184
4V53|1|DB|U|2185
4V53|1|DB|G|2186

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DH

50S ribosomal protein L9