IL_4V54_062

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V54_062 not in the Motif Atlas

Geometric match to IL_5VCI_002

Geometric discrepancy: 0.1094

The information below is about IL_5VCI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V54|1|AA|G|1405
4V54|1|AA|U|1406
4V54|1|AA|C|1407
*
4V54|1|AA|G|1494
4V54|1|AA|U|1495
4V54|1|AA|C|1496

Current chains

Chain AA

16S rRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA