IL_4V54_111
3D structure
- PDB id
- 4V54 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 4V54|1|BB|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V54_111 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.1783
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
4V54|1|BB|C|1043
4V54|1|BB|C|1044
4V54|1|BB|C|1045
4V54|1|BB|A|1046
4V54|1|BB|G|1047
4V54|1|BB|A|1048
4V54|1|BB|C|1049
4V54|1|BB|A|1050
4V54|1|BB|G|1051
*
4V54|1|BB|U|1108
4V54|1|BB|C|1109
4V54|1|BB|G|1110
4V54|1|BB|A|1111
4V54|1|BB|G|1112
Current chains
- Chain BB
- 23S rRNA
Nearby chains
- Chain B4
- 50S ribosomal protein L36
- Chain BG
- 50S ribosomal protein L6
Coloring options: