IL_4V54_124

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

4V54|1|BB|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V54_124 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1858

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4V54|1|BB|G|1432
4V54|1|BB|A|1433
4V54|1|BB|A|1434
4V54|1|BB|G|1435
*
4V54|1|BB|C|1557
4V54|1|BB|C|1558
4V54|1|BB|U|1559
4V54|1|BB|G|1560
4V54|1|BB|C|1561

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2