IL_4V54_219

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V54_219 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0617

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V54|1|CA|G|887
4V54|1|CA|G|888
4V54|1|CA|A|889
4V54|1|CA|G|890
4V54|1|CA|U|891
4V54|1|CA|A|892
4V54|1|CA|C|893
4V54|1|CA|G|894
*
4V54|1|CA|U|905
4V54|1|CA|A|906
4V54|1|CA|A|907
4V54|1|CA|A|908
4V54|1|CA|A|909
4V54|1|CA|C|910

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CL

30S ribosomal protein S12