IL_4V54_334
3D structure
- PDB id
- 4V54 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AAU*AGGUU
- Length
- 8 nucleotides
- Bulged bases
- 4V54|1|DB|U|2320
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V54_334 not in the Motif Atlas
- Homologous match to IL_5J7L_332
- Geometric discrepancy: 0.545
- The information below is about IL_5J7L_332
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61476.2
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
4V54|1|DB|A|2297
4V54|1|DB|A|2298
4V54|1|DB|U|2299
*
4V54|1|DB|A|2317
4V54|1|DB|G|2318
4V54|1|DB|G|2319
4V54|1|DB|U|2320
4V54|1|DB|U|2321
Current chains
- Chain DB
- 23S rRNA
Nearby chains
- Chain DA
- 5S ribosomal RNA; 5S rRNA
- Chain DF
- 50S ribosomal protein L5
- Chain DO
- 50S ribosomal protein L18
- Chain DW
- 50S ribosomal protein L27
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