IL_4V54_362

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V54_362 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1057

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V54|1|DB|U|1851
4V54|1|DB|U|1852
4V54|1|DB|A|1853
4V54|1|DB|A|1854
4V54|1|DB|U|1855
4V54|1|DB|U|1856
4V54|1|DB|G|1857
4V54|1|DB|A|1858
4V54|1|DB|U|1859
4V54|1|DB|G|1860
*
4V54|1|DB|U|1882
4V54|1|DB|U|1883
4V54|1|DB|G|1884
4V54|1|DB|A|1885
4V54|1|DB|U|1886
4V54|1|DB|C|1887
4V54|1|DB|G|1888
4V54|1|DB|A|1889
4V54|1|DB|A|1890
4V54|1|DB|G|1891

Current chains

Chain DB

23S rRNA

Nearby chains