IL_4V55_012

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V55|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V55_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1392

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V55|1|AA|G|147
4V55|1|AA|G|148
4V55|1|AA|A|149
4V55|1|AA|U|150
4V55|1|AA|A|151
4V55|1|AA|A|152
4V55|1|AA|C|153
*
4V55|1|AA|G|168
4V55|1|AA|C|169
4V55|1|AA|U|170
4V55|1|AA|A|171
4V55|1|AA|A|172
4V55|1|AA|U|173
4V55|1|AA|A|174
4V55|1|AA|C|175

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20