3D structure

PDB id
4V55 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
GGGAG*UC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V55_039 not in the Motif Atlas
Homologous match to IL_5J7L_036
Geometric discrepancy: 0.1134
The information below is about IL_5J7L_036
Detailed Annotation
Left turn
Broad Annotation
Left turn
Motif group
IL_29346.2
Basepair signature
cWW-L-cWW-L-L
Number of instances in this motif group
3

Unit IDs

4V55|1|AA|G|774
4V55|1|AA|G|775
4V55|1|AA|G|776
4V55|1|AA|A|777
4V55|1|AA|G|778
*
4V55|1|AA|U|804
4V55|1|AA|C|805

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AK
30S ribosomal protein S11
Chain BB
Large subunit ribosomal RNA; LSU rRNA
Chain BC
50S ribosomal protein L2

Coloring options:


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