IL_4V55_215
3D structure
- PDB id
- 4V55 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- AGAAUU*AGGAAU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V55_215 not in the Motif Atlas
- Homologous match to IL_4LFB_030
- Geometric discrepancy: 0.1012
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V55|1|CA|A|673
4V55|1|CA|G|674
4V55|1|CA|A|675
4V55|1|CA|A|676
4V55|1|CA|U|677
4V55|1|CA|U|678
*
4V55|1|CA|A|712
4V55|1|CA|G|713
4V55|1|CA|G|714
4V55|1|CA|A|715
4V55|1|CA|A|716
4V55|1|CA|U|717
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CF
- 30S ribosomal protein S6
- Chain CK
- 30S ribosomal protein S11
- Chain CR
- 30S ribosomal protein S18
- Chain CU
- 30S ribosomal protein S21
- Chain DC
- 50S ribosomal protein L2
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