IL_4V55_231

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V55_231 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.1043

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

4V55|1|CA|G|1124
4V55|1|CA|U|1125
4V55|1|CA|U|1126
4V55|1|CA|G|1127
4V55|1|CA|C|1128
*
4V55|1|CA|G|1144
4V55|1|CA|A|1145
4V55|1|CA|A|1146
4V55|1|CA|C|1147
4V55|1|CA|U|1148
4V55|1|CA|C|1149

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10