IL_4V55_248

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGUCCC*GAAAC

Length

11 nucleotides

Bulged bases

4V55|1|DA|U|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V55_248 not in the Motif Atlas

Homologous match to IL_7A0S_103

Geometric discrepancy: 0.1889

The information below is about IL_7A0S_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18472.5

Basepair signature

cWW-tSW-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4V55|1|DA|G|23
4V55|1|DA|G|24
4V55|1|DA|U|25
4V55|1|DA|C|26
4V55|1|DA|C|27
4V55|1|DA|C|28
*
4V55|1|DA|G|56
4V55|1|DA|A|57
4V55|1|DA|A|58
4V55|1|DA|A|59
4V55|1|DA|C|60

Current chains

Chain DA

5S rRNA

Nearby chains

Chain DF

50S ribosomal protein L5

Chain DO

50S ribosomal protein L18