IL_4V55_261

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V55_261 not in the Motif Atlas

Homologous match to IL_4WF9_014

Geometric discrepancy: 0.1631

The information below is about IL_4WF9_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76658.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4V55|1|DB|U|293
4V55|1|DB|A|294
4V55|1|DB|G|295
*
4V55|1|DB|C|343
4V55|1|DB|A|344
4V55|1|DB|A|345
4V55|1|DB|A|346
4V55|1|DB|A|347

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DU

50S ribosomal protein L24