IL_4V55_347

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V55_347 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.1117

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V55|1|DB|C|2652
4V55|1|DB|U|2653
4V55|1|DB|A|2654
4V55|1|DB|G|2655
4V55|1|DB|U|2656
4V55|1|DB|A|2657
4V55|1|DB|C|2658
*
4V55|1|DB|G|2663
4V55|1|DB|G|2664
4V55|1|DB|A|2665
4V55|1|DB|C|2666
4V55|1|DB|C|2667
4V55|1|DB|G|2668

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DG

50S ribosomal protein L6