IL_4V56_359
3D structure
- PDB id
- 4V56 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V56_359 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.116
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
4V56|1|CA|A|673
4V56|1|CA|G|674
4V56|1|CA|A|675
4V56|1|CA|A|676
4V56|1|CA|U|677
*
4V56|1|CA|G|713
4V56|1|CA|G|714
4V56|1|CA|A|715
4V56|1|CA|A|716
4V56|1|CA|U|717
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CF
- 30S ribosomal protein S6
- Chain CK
- 30S ribosomal protein S11
- Chain CR
- 30S ribosomal protein S18
- Chain CU
- 30S ribosomal protein S21
- Chain DC
- 50S ribosomal protein L2
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