IL_4V57_089

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V57|1|BB|G|801, 4V57|1|BB|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_089 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0814

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V57|1|BB|G|674
4V57|1|BB|A|675
4V57|1|BB|A|676
4V57|1|BB|A|677
4V57|1|BB|C|678
*
4V57|1|BB|G|799
4V57|1|BB|A|800
4V57|1|BB|G|801
4V57|1|BB|A|802
4V57|1|BB|U|803
4V57|1|BB|A|804
4V57|1|BB|G|805
4V57|1|BB|C|806

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15