IL_4V57_110

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_110 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.1384

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4V57|1|BB|G|1038
4V57|1|BB|A|1039
4V57|1|BB|A|1040
4V57|1|BB|G|1041
*
4V57|1|BB|C|1114
4V57|1|BB|G|1115
4V57|1|BB|G|1116
4V57|1|BB|C|1117

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BG

50S ribosomal protein L6

Chain BM

50S ribosomal protein L16

Chain BV

50S ribosomal protein L25