IL_4V57_111

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases (A, C, G, U)

1046A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_111 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1659

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V57|1|BB|C|1043
4V57|1|BB|C|1044
4V57|1|BB|C|1045
4V57|1|BB|A|1046
4V57|1|BB|G|1047
4V57|1|BB|A|1048
4V57|1|BB|C|1049
4V57|1|BB|A|1050
4V57|1|BB|G|1051
*
4V57|1|BB|U|1108
4V57|1|BB|C|1109
4V57|1|BB|G|1110
4V57|1|BB|A|1111
4V57|1|BB|G|1112

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6