IL_4V57_126

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

4V57|1|BB|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_126 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.1132

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V57|1|BB|U|1468
4V57|1|BB|A|1469
4V57|1|BB|A|1470
4V57|1|BB|G|1471
*
4V57|1|BB|U|1520
4V57|1|BB|G|1521
4V57|1|BB|A|1522
4V57|1|BB|U|1523
4V57|1|BB|G|1524

Current chains

Chain BB

23S rRNA

Nearby chains