IL_4V57_132

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAA*UCC

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_132 not in the Motif Atlas

Homologous match to IL_4WF9_063

Geometric discrepancy: 0.1115

The information below is about IL_4WF9_063

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_54997.8

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

4V57|1|BB|G|1663
4V57|1|BB|A|1664
4V57|1|BB|A|1665
*
4V57|1|BB|U|1995
4V57|1|BB|C|1996
4V57|1|BB|C|1997

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14

Chain BP

50S ribosomal protein L19