IL_4V57_221
3D structure
- PDB id
- 4V57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 4V57|1|CA|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V57_221 not in the Motif Atlas
- Homologous match to IL_5J7L_041
- Geometric discrepancy: 0.1378
- The information below is about IL_5J7L_041
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.2
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
4V57|1|CA|G|933
4V57|1|CA|C|934
4V57|1|CA|A|935
*
4V57|1|CA|U|1380
4V57|1|CA|U|1381
4V57|1|CA|C|1382
4V57|1|CA|C|1383
4V57|1|CA|C|1384
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CG
- 30S ribosomal protein S7
- Chain CI
- 30S ribosomal protein S9
Coloring options: