IL_4V57_257

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_257 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0825

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V57|1|DB|C|239
4V57|1|DB|C|240
4V57|1|DB|A|241
4V57|1|DB|G|242
4V57|1|DB|U|243
4V57|1|DB|A|244
4V57|1|DB|G|245
*
4V57|1|DB|C|253
4V57|1|DB|G|254
4V57|1|DB|A|255
4V57|1|DB|A|256
4V57|1|DB|C|257
4V57|1|DB|G|258

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DL

50S ribosomal protein L15