IL_4V57_275

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGG*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_275 not in the Motif Atlas

Geometric match to IL_2R8S_001

Geometric discrepancy: 0.1873

The information below is about IL_2R8S_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V57|1|DB|G|856
4V57|1|DB|G|857
4V57|1|DB|G|858
*
4V57|1|DB|U|919
4V57|1|DB|A|920
4V57|1|DB|C|921

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DA

5S ribosomal RNA; 5S rRNA

Chain DW

50S ribosomal protein L27

Chain DY

50S ribosomal protein L30